X-Recipient: archive-cygwin AT delorie DOT com DomainKey-Signature: a=rsa-sha1; c=nofws; d=sourceware.org; h=list-id :list-unsubscribe:list-subscribe:list-archive:list-post :list-help:sender:message-id:from:to:subject:date:content-type :content-transfer-encoding:mime-version; q=dns; s=default; b=y0+ uFwiodnydgkLV2MgSHqCHr8z/M0alXpcCwAAHgFAKNT859yNT8vkSIRu90DVncL1 rllyumruSP8TNaKNGTQxBonhZ7GUUKBC/WehsAffShGoSwF7xWCCh7DI7CaoStCm +ujGcxhC5QGw5XEaXsuXOGWm6Tz/8IMOw8k/BYyU= DKIM-Signature: v=1; a=rsa-sha1; c=relaxed; d=sourceware.org; h=list-id :list-unsubscribe:list-subscribe:list-archive:list-post :list-help:sender:message-id:from:to:subject:date:content-type :content-transfer-encoding:mime-version; s=default; bh=s1rQmhz8O blvsYwTo+sLIv5klRM=; b=N/3/HAZdQQOvcGtUyGriO9EeSqlMyZa5Te+eXoKwl I6AdFFzIzqViGt7xDqjcRMaR9y36wSVQ694iEKTezX3pT88KqIe/WmgAbM/7ThBC RdWrKP2xFY3K6cGZfOgwbMda0hriomk11Wr5kRq1cOfEp3IyNi0SlY4IVSTof7yC Ho= Mailing-List: contact cygwin-help AT cygwin DOT com; run by ezmlm List-Id: List-Subscribe: List-Archive: List-Post: List-Help: , Sender: cygwin-owner AT cygwin DOT com Mail-Followup-To: cygwin AT cygwin DOT com Delivered-To: mailing list cygwin AT cygwin DOT com Authentication-Results: sourceware.org; auth=none X-Virus-Found: No X-Spam-SWARE-Status: No, score=-1.0 required=5.0 tests=AWL,BAYES_00,FREEMAIL_FROM,RCVD_IN_DNSWL_LOW,SPF_PASS autolearn=ham version=3.3.2 spammy=family, sk:python-, HImportance:Normal, sk:python X-HELO: mail-pf0-f176.google.com X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20130820; h=x-gm-message-state:message-id:from:to:subject:date:importance :content-type:content-transfer-encoding:mime-version; bh=RfwrYww5VXMClG85vDOTcRxUbkOX9DQlKPJK0BC2ikU=; b=Q1NWTZVW/JV2oFPWCs0WpFd8HZ5Fg3Gy6iOtqjDGymZRMyV3ecHOQ0R31fjP/vW3na ejsoN8/ql7zY2Lf7oe1RmamzjzSdie+E6Zdkk5kVii6bnNS9jeTkJlsNL7HYYK0sxq05 ZlhBaCHXQwQH/tRvLEQgNuFoPMpWd06MiaPiPW0lfVZrAzsZ3o3UpfXW5ZR3zvrCdB2s 23SFzamIX7Tddp4N16w2d/0YmMqKirbiBNpABRguzoJ8v95ogZd9cEuWsxnt5ucDgAOW TzCDO6negLQcTBVVoCMQF7qR0P6a7xiu59G4oA8thiqqFSJ0df4eXWzeks+YuX2KI4Jg EhAg== X-Gm-Message-State: AG10YOR7oz4yli8d51Dg+U191xeznfrDZ+Gn5EGxNlcwoLJ0ejfHZdKI/9ev9PrKhJGhXw== X-Received: by 10.98.12.131 with SMTP id 3mr29323479pfm.155.1453755910139; Mon, 25 Jan 2016 13:05:10 -0800 (PST) X-TMN: [wUywdINSz1QDGTOaRmxmoe/Iq10jMlbq] Message-ID: From: Robert May To: "cygwin AT cygwin DOT com" Subject: Platypus error running Build after installing update 2.4.1.1 to Cygwin64 Date: Tue, 26 Jan 2016 07:05:08 +1000 Content-Type: text/plain; charset="iso-8859-1" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-MIME-Autoconverted: from quoted-printable to 8bit by delorie.com id u0PL5Vi8023534 Robert AT DESKTOP-14EL82S /usr/local/bin/Platypus_0.8.1 $ ./buildPlatypus.sh Building Platypus running build running build_py running build running build_py running build running build_py running build running build_py running build running build_py running build running build_py running build running build_py running build running build_py running build running build_ext building 'htslibWrapper' extension gcc -fno-strict-aliasing -ggdb -O2 -pipe -Wimplicit-function-declaration -fdebug-prefix-map=/usr/src/ports/python/python-2.7.10-1.x86_64/build=/usr/src/debug/python-2.7.10-1 -fdebug-prefix-map=/usr/src/ports/python/python-2.7.10-1.x86_64/src/Python-2.7.10=/usr/src/debug/python-2.7.10-1 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/include/python2.7 -c htslibWrapper.c -o build/temp.cygwin-2.4.0-x86_64-2.7/htslibWrapper.o -msse2 -msse3 -funroll-loops -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC htslibWrapper.c:1:0: warning: -fPIC ignored for target (all code is position independent)  /* Generated by Cython 0.21.1 */  ^ gcc -shared -Wl,--enable-auto-image-base -L. build/temp.cygwin-2.4.0-x86_64-2.7/htslibWrapper.o -L/usr/lib/python2.7/config -L/usr/lib -lhts -lpython2.7 -o build/lib.cygwin-2.4.0-x86_64-2.7/htslibWrapper.dll /usr/lib/gcc/x86_64-pc-cygwin/4.9.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lhts collect2: error: ld returned 1 exit status error: command 'gcc' failed with exit status 1 Setup failed. Check previous lines for errors  Bob May DNA Projects I2b L415, I2c L596 HG, Spriggs of Cleve SA Family & Tyler Surname and ISOGG YTree -- Problem reports: http://cygwin.com/problems.html FAQ: http://cygwin.com/faq/ Documentation: http://cygwin.com/docs.html Unsubscribe info: http://cygwin.com/ml/#unsubscribe-simple