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Subject: Netcdf error using Generic Mapping Tools 
Thread-Topic: Netcdf error using Generic Mapping Tools 
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Date: Tue, 14 Jun 2022 11:16:25 +0000
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From: Carl Fredrik Forsberg via Cygwin <cygwin@cygwin.com>
Reply-To: Carl Fredrik Forsberg <Carl.Fredrik.Forsberg@ngi.no>
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I have compiled Generic Mapping Tools (GMT; www.generic-mapping-tools.org) version 6.3.0 on Cygwin without any errors using the same workflow as for previous versions.
Previous versions have worked fine. I now get the following errors from GMT when trying to access the accompanying gshhg database of coastal outlines (Netcdf files). I have used the netcdf libraries etc. from the Cygwin depository when compiling GMT.

gshhg_version: cannot open file "/GMT6/gshhg-gmt-2.3.6/binned_border_f.nc" (-101).
gmtget [ERROR]: 1. GSHHG: Found /GMT6/gshhg-gmt-2.3.6/binned_border_f.nc but cannot read it due to wrong permissions
gshhg_version: cannot open file "/GMT6/gmt-6.3.0/share/coast/binned_border_f.nc" (-101).

Permissions are all ok with read and write access. I believe the -101 in brackets is a Netcdf error code indicating a HDF5 error (#define NC_EHDFERR (-101) // Error at HDF5 layer).

Any hints would be appreciated.

Best regards
Carl Fredrik
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