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Date:	Wed, 24 Jul 2024 00:08:45 +0900
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Subject:	GCC 12.4.0-2 causing OpenMP issues within MMseqs2
To:	cygwin AT cygwin DOT com
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From:	Milot Mirdita via Cygwin <cygwin AT cygwin DOT com>
Reply-To:	Milot Mirdita <milot AT mirdita DOT de>
Sender:	"Cygwin" <cygwin-bounces~archive-cygwin=delorie DOT com AT cygwin DOT com>

Hi!

I am the maintainer for the bioinformatics tool suite MMseqs2.
We build Windows binaries for our windows users with Cygwin for many years
without major issues. Thanks a lot!

This weeks' GCC 12.4 update seems to have introduced issues with OpenMP.
Every command line invocation that uses OpenMP now fails with:
libgomp: Out of memory allocating 1504 bytes

We build the binaries and run integration tests within Azure Pipelines, so
it should be straightforward to reproduce:
https://github.com/soedinglab/MMseqs2/blob/a14688744081c15439fa3092eec9dfd8be40440b/azure-pipelines.yml#L210-L244

The previous CI build ~2 weeks ago ran successfully:
https://github.com/soedinglab/MMseqs2/runs/27320996112

Any help would be appreciated!

Best regards,
Milot Mirdita

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