X-Recipient:	archive-cygwin AT delorie DOT com
DomainKey-Signature:	a=rsa-sha1; c=nofws; d=sourceware.org; h=list-id
	:list-unsubscribe:list-subscribe:list-archive:list-post
	:list-help:sender:message-id:from:to:subject:date:content-type
	:content-transfer-encoding:mime-version; q=dns; s=default; b=aBx
	+Xz6Z7fIFDtfh5dx9WDEbvgeJqG0KhohLaYyaaM/5BGxwnX+yfa1kArpRMX4zRjN
	HQbK/cLQ9iVWAqjh/RCxe2kGNrODyu0WRacDK9SOjeK827zaWfhduu9OKCIkXCxK
	QScrP3mw+Dq7c2IwMAab1Q0qYB5A1dyxNrddwVhY=
DKIM-Signature:	v=1; a=rsa-sha1; c=relaxed; d=sourceware.org; h=list-id
	:list-unsubscribe:list-subscribe:list-archive:list-post
	:list-help:sender:message-id:from:to:subject:date:content-type
	:content-transfer-encoding:mime-version; s=default; bh=cm+vzYj9t
	ZPedMx3Vd1z8N1bn88=; b=kKByUJ2x2nmpBzT4k0jYeqnvQ3TIGSmaltVUezryh
	JKk8aN+hrRXvCUN/bMZaIMPnxFqbcK+M8+pjOltDzn/Jh92KKbF0KWAxpcvvQ6s3
	PkHKj1Zw/J892Dlo7WjF/c0epCtJc9Tin388ir3ciuGT1BsyG8NPo+3UE9bp8x77
	Os=
Mailing-List:	contact cygwin-help AT cygwin DOT com; run by ezmlm
List-Id:	<cygwin.cygwin.com>
List-Subscribe:	<mailto:cygwin-subscribe AT cygwin DOT com>
List-Archive:	<http://sourceware.org/ml/cygwin/>
List-Post:	<mailto:cygwin AT cygwin DOT com>
List-Help:	<mailto:cygwin-help AT cygwin DOT com>, <http://sourceware.org/ml/#faqs>
Sender:	cygwin-owner AT cygwin DOT com
Mail-Followup-To:	cygwin AT cygwin DOT com
Delivered-To:	mailing list cygwin AT cygwin DOT com
Authentication-Results:	sourceware.org; auth=none
X-Virus-Found:	No
X-Spam-SWARE-Status:	No, score=-1.5 required=5.0 tests=AWL,BAYES_00,FREEMAIL_FROM,RCVD_IN_DNSWL_LOW,SPF_PASS autolearn=ham version=3.3.2 spammy=personal, family, HImportance:Normal
X-HELO:	mail-pf0-f175.google.com
X-Google-DKIM-Signature:	v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20130820; h=x-gm-message-state:message-id:from:to:subject:date:importance :content-type:content-transfer-encoding:mime-version; bh=zUPdrUVzscNW165aOzQBxmrjuUXLYRd6Wc2q4uRbOpE=; b=TASxU/hpolEd7TTNBVkWbWZ6WnurnUQnlOcJIe1CbXUy+8XjQeLIJ7/aP5yKNs157J Az4N4Ql7ZV5ihTF81GQkXRRnkNxRhtEMxYWShWaZ7ehsD5Cald/XITuYTx04Ilg40Kdi A1XmBrBvodZKhKTvjooD2vyf0dfWj+qcT0RdEpxkzSCez997rkYobPeMCKrJZlbVMduO Z9yATgWHVEq2feaJs0KFuNJdHg6yKCewuN24mFABwQUUZbF2jY+00GiMP4P2sIcuFqSL LMCFt8HpyW0Whd2A7j2vrK8sfnl6gOM4GVwoYa8/57jGMQ3cEeiiVkcMyqzVDDaUX43m joIw==
X-Gm-Message-State:	AG10YORgL+Xw/HkEDXePCAuTXer+/I7ffpHXscIqZ5MG+Be3LkvdW3R/NZQsV5GxBfgz8A==
X-Received:	by 10.98.64.195 with SMTP id f64mr792651pfd.103.1453758034090; Mon, 25 Jan 2016 13:40:34 -0800 (PST)
X-TMN:	[/7oSnhmsG4pBWe7IbWopxI8f1XTZxcWu]
Message-ID:	<BAY175-W31F6CA55D18FD6CD087A34ADC70@phx.gbl>
From:	Robert May <tpibob AT gmail DOT com>
To:	"cygwin AT cygwin DOT com" <cygwin AT cygwin DOT com>
Subject:	Re error after installing cygwin64 4.3.1.1
Date:	Tue, 26 Jan 2016 07:40:32 +1000
MIME-Version:	1.0
X-MIME-Autoconverted:	from quoted-printable to 8bit by delorie.com id u0PLevEj028338

Marco
The choice of using usr/local/bin was the way to go according to the INSTALL instructions with most of the programs.

some use ./confire    -    make     -     make install

some use      make     make install


I think one used just make and one used Build.

If I remember the wording correctly "they say" copy your "package" "program" to the usr/local/bin foler and then in cycgwin use cd drive:/cygwin64/usr/local/bin and the use the followinf commands or script to install the package/program

Bob



htslib configure - make - make install ok
>
> samtools configure ok
>
> Robert AT DESKTOP-14EL82S /usr/local/bin/samtools-1.3

Personal preference: in general "/usr/local/bin" is not the place
that I will use as build area.

> $ ./configure

can you please clarify what is your problem ?

I tried to build samtools-1.3 and it has at least two issue
for a porting to cygwin:

- on Makefile there is a -rdynamic that does not work on cygwin
- the package require expl and logl that are not yet available in cygwin



Regards
Marco

 Bob May
DNA Projects I2b L415, I2c L596 HG, Spriggs of Cleve SA Family & Tyler Surname and ISOGG YTree 		 	   		  
--
Problem reports:       http://cygwin.com/problems.html
FAQ:                   http://cygwin.com/faq/
Documentation:         http://cygwin.com/docs.html
Unsubscribe info:      http://cygwin.com/ml/#unsubscribe-simple

- Raw text -