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Subject:	Re: Updated Cygwin64 with 2.4.1.1
To:	cygwin AT cygwin DOT com
References:	<BAY175-W1506B08F4E02E2A7091D3FADC60 AT phx DOT gbl> <BAY175-W5181E01DB1BED570790586ADC60 AT phx DOT gbl>
From:	Marco Atzeri <marco DOT atzeri AT gmail DOT com>
Message-ID:	<56A5F7AA.9010401@gmail.com>
Date:	Mon, 25 Jan 2016 11:23:38 +0100
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On 25/01/2016 00:39, Robert May wrote:

Hi Robert,
The mail subject is not very useful


> Instalation error
> -/unknown package
> x3270.sh exit code 1

this is an issue completely unrelated to the rest of your mail

> htslib configure - make - make install ok
>
> samtools configure ok
>
> Robert AT DESKTOP-14EL82S /usr/local/bin/samtools-1.3

Personal preference: in general  "/usr/local/bin" is not the place
that I will use as build area.

> $ ./configure

can you please clarify what is your problem ?

I tried to build samtools-1.3 and it has at least two issue
for a porting to cygwin:

- on Makefile there is a -rdynamic that does not work on cygwin
- the package require expl and logl that are not yet available in cygwin



Regards
Marco




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